Ting Chen

	2010
88		Xiaosong Zhang, Ting Chen, Jiong Zheng, Hua Li: Proactive worm propagation modeling and analysis in unstructured peer-to-peer networks. Journal of Zhejiang University - Science C 11(2): 119-129 (2010)
	2009
87		Yongjian Wang, Yinan Ren, Ting Chen, Yuanqiang Huang, Zhongzhi Luan, Zhongxin Wu, Depei Qian: Cesar-FD: An Effective Stateful Fault Detection Mechanism in Drug Discovery Grid. CCGRID 2009: 580-585
86		AnHai Doan, Jeffrey F. Naughton, Akanksha Baid, Xiaoyong Chai, Fei Chen, Ting Chen, Eric Chu, Pedro DeRose, Byron J. Gao, Chaitanya Gokhale, Jiansheng Huang, Warren Shen, Ba-Quy Vuong: The Case for a Structured Approach to Managing Unstructured Data. CIDR 2009
85		Xiaosong Zhang, Fei Liu, Ting Chen, Hua Li: Research and Application of the Transparent Data Encpryption in Intranet Data Leakage Prevention. CIS (2) 2009: 376-379
84		Ting Chen, Sung N. Kim, Jinghao Zhou, Dimitris N. Metaxas, Gunaretnam Rajagopal, Ning j. Yue: 3D Meshless Prostate Segmentation and Registration in Image Guided Radiotherapy. MICCAI (1) 2009: 43-50
83		Yangho Chen, Tade Souaiaia, Ting Chen: PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds. Bioinformatics 25(19): 2514-2521 (2009)
82		AnHai Doan, Jeffrey F. Naughton, Akanksha Baid, Xiaoyong Chai, Fei Chen, Ting Chen, Eric Chu, Pedro DeRose, Byron J. Gao, Chaitanya Gokhale, Jiansheng Huang, Warren Shen, Ba-Quy Vuong: The Case for a Structured Approach to Managing Unstructured Data CoRR abs/0909.1783: (2009)
81		Lingli Sun, Ting Chen: Comparing the Zagreb indices for graphs with small difference between the maximum and minimum degrees. Discrete Applied Mathematics 157(7): 1650-1654 (2009)
80		Ting Chen, Chong Zhang, Xia Chen, Liqing Li: An Input Variable Selection Method for the Artificial Neural Network of Shear Stiffness of Worsted Fabrics. Statistical Analysis and Data Mining 1(5): 287-295 (2009)
	2008
79		Xiaoxu Wang, Dimitris N. Metaxas, Ting Chen, Leon Axel: Meshless deformable models for LV motion analysis. CVPR 2008
78		Ting Chen, Xiaoxu Wang, Dimitris N. Metaxas, Leon Axel: 3D cardiac motion tracking using Robust Point Matching and meshless deformable models. ISBI 2008: 280-283
77		Xiaoxu Wang, Ting Chen, Shaoting Zhang, Dimitris N. Metaxas, Leon Axel: LV Motion and Strain Computation from tMRI Based on Meshless Deformable Models. MICCAI (1) 2008: 636-644
76		Ting Chen, Xiaoxu Wang, Dimitris N. Metaxas, Leon Axel: Fast Motion Tracking of Tagged MRI Using Angle-Preserving Meshless Registration. MICCAI (2) 2008: 313-320
75		Ting Chen, James Babb, Peter Kellman, Leon Axel, Daniel Kim: Semiautomated Segmentation of Myocardial Contours for Fast Strain Analysis in Cine Displacement-Encoded MRI. IEEE Trans. Med. Imaging 27(8): 1084-1094 (2008)
74		Jiansheng Huang, Ting Chen, AnHai Doan, Jeffrey F. Naughton: On the provenance of non-answers to queries over extracted data. PVLDB 1(1): 736-747 (2008)
73		AnHai Doan, Jeffrey F. Naughton, Raghu Ramakrishnan, Akanksha Baid, Xiaoyong Chai, Fei Chen, Ting Chen, Eric Chu, Pedro DeRose, Byron J. Gao, Chaitanya Gokhale, Jiansheng Huang, Warren Shen, Ba-Quy Vuong: Information extraction challenges in managing unstructured data. SIGMOD Record 37(4): 14-20 (2008)
	2007
72		Ting Chen, Sohae Chung, Leon Axel: Automated Tag Tracking Using Gabor Filter Bank, Robust Point Matching, and Deformable Models. FIMH 2007: 22-31
71		Xiaoxu Wang, Joël Schaerer, Suejung B. Huh, Zhen Qian, Dimitris N. Metaxas, Ting Chen, Leon Axel: Reconstruction of Detailed Left Ventricle Motion from tMRI Using Deformable Models. FIMH 2007: 60-69
70		Ting Chen, Feng Li: Analysis of Pi Series and Its Application to Image Encryption. ICIC (3) 2007: 695-703
69		Leon Axel, Sohae Chung, Ting Chen: Tagged Mri Analysis Using Gabor Filters. ISBI 2007: 684-687
68		Piramanayagam Arumuga Nainar, Ting Chen, Jake Rosin, Ben Liblit: Statistical debugging using compound boolean predicates. ISSTA 2007: 5-15
67		Ting Chen, Sohae Chung, Leon Axel: 2D Motion Analysis of Long Axis Cardiac Tagged MRI. MICCAI (2) 2007: 469-476
66		Eric Chu, Akanksha Baid, Ting Chen, AnHai Doan, Jeffrey F. Naughton: A Relational Approach to Incrementally Extracting and Querying Structure in Unstructured Data. VLDB 2007: 1045-1056
65		Debojyoti Dutta, Ting Chen: Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search. Bioinformatics 23(5): 612-618 (2007)
64		Ting Chen, Frank K. Hwang: A competitive algorithm in searching for many edges in a hypergraph. Discrete Applied Mathematics 155(4): 566-571 (2007)
	2006
63		Vivy Suhendra, Tulika Mitra, Abhik Roychoudhury, Ting Chen: Efficient detection and exploitation of infeasible paths for software timing analysis. DAC 2006: 358-363
62		Dimitris N. Metaxas, Zhen Qian, Xiaolei Huang, Rui Huang, Ting Chen, Leon Axel: Hybrid Deformable Models for Medical Segmentation and Registration. ICARCV 2006: 1-6
61		Zhidong Tu, Li Wang, Michelle N. Arbeitman, Ting Chen, Fengzhu Sun: An integrative approach for causal gene identification and gene regulatory pathway inference. ISMB (Supplement of Bioinformatics) 2006: 489-496
60		Biman Chakraborty, Ting Chen, Tulika Mitra, Abhik Roychoudhury: Handling Constraints in Multi-Objective GA for Embedded System Design. VLSI Design 2006: 305-310
59		Hyunju Lee, Minghua Deng, Fengzhu Sun, Ting Chen: An integrated approach to the prediction of domain-domain interactions. BMC Bioinformatics 7: 269 (2006)
58		Rui Jiang, Hua Yang, Fengzhu Sun, Ting Chen: Searching for interpretable rules for disease mutations: a simulated annealing bump hunting strategy. BMC Bioinformatics 7: 417 (2006)
57		Debojyoti Dutta, Rajarshi Guha, Peter C. Jurs, Ting Chen: Scalable Partitioning and Exploration of Chemical Spaces Using Geometric Hashing. Journal of Chemical Information and Modeling 46(1): 321-333 (2006)
56		Rajarshi Guha, Debojyoti Dutta, Peter C. Jurs, Ting Chen: R-NN Curves: An Intuitive Approach to Outlier Detection Using a Distance Based Method. Journal of Chemical Information and Modeling 46(4): 1713-1722 (2006)
55		Rajarshi Guha, Debojyoti Dutta, Peter C. Jurs, Ting Chen: Local Lazy Regression: Making Use of the Neighborhood to Improve QSAR Predictions. Journal of Chemical Information and Modeling 46(4): 1836-1847 (2006)
	2005
54		Ping Guo, Yang Zhou, Jun Zhuang, Ting Chen, Yan-Rong Kang: An Efficient Algorithm for Mining Both Closed and Maximal Frequent Free Subtrees Using Canonical Forms. ADMA 2005: 96-107
53		Leon Axel, Ting Chen, Tushar Manglik: Dense Myocardium Deformation Estimation for 2D Tagged MRI. FIMH 2005: 446-456
52		Yunhu Wan, Ting Chen: A Hidden Markov Model Based Scoring Function for Mass Spectrometry Database Search. RECOMB 2005: 342-356
51		Vivy Suhendra, Tulika Mitra, Abhik Roychoudhury, Ting Chen: WCET Centric Data Allocation to Scratchpad Memory. RTSS 2005: 223-232
50		Yao-Ting Huang, Kun-Mao Chao, Ting Chen: An approximation algorithm for haplotype inference by maximum parsimony. SAC 2005: 146-150
49		Ting Chen, Jiaheng Lu, Tok Wang Ling: On Boosting Holism in XML Twig Pattern Matching using Structural Indexing Techniques. SIGMOD Conference 2005: 455-466
48		Jiaheng Lu, Tok Wang Ling, Chee Yong Chan, Ting Chen: From Region Encoding To Extended Dewey: On Efficient Processing of XML Twig Pattern Matching. VLDB 2005: 193-204
47		Ting Chen, Tulika Mitra, Abhik Roychoudhury, Vivy Suhendra: Exploiting Branch Constraints without Exhaustive Path Enumeration. WCET 2005
46		Jiaheng Lu, Ting Chen, Tok Wang Ling: TJFast: effective processing of XML twig pattern matching. WWW (Special interest tracks and posters) 2005: 1118-1119
45		Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao: Selecting additional tag SNPs for tolerating missing data in genotyping. BMC Bioinformatics 6: 263 (2005)
44		Kui Zhang, Zhaohui S. Qin, Ting Chen, Jun S. Liu, Michael S. Waterman, Fengzhu Sun: HapBlock: haplotype block partitioning and tag SNP selection software using a set of dynamic programming algorithms. Bioinformatics 21(1): 131-134 (2005)
43		Shih-Chieh Su, C. C. Jay Kuo, Ting Chen: Inference of missing SNPs and information quantity measurements for haplotype blocks. Bioinformatics 21(9): 2001-2007 (2005)
42		Yao-Ting Huang, Kun-Mao Chao, Ting Chen: An Approximation Algorithm for Haplotype Inference by Maximum Parsimony. Journal of Computational Biology 12(10): 1261-1274 (2005)
	2004
41		Jiaheng Lu, Ting Chen, Tok Wang Ling: Efficient processing of XML twig patterns with parent child edges: a look-ahead approach. CIKM 2004: 533-542
40		Xiaolei Huang, Dimitris N. Metaxas, Ting Chen: MetaMorphs: Deformable Shape and Texture Models. CVPR (1) 2004: 496-503
39		Daofeng Luo, Ting Chen, Tok Wang Ling, Xiaofeng Meng: On View Transformation Support for a Native XML DBMS. DASFAA 2004: 226-231
38		Ting Chen, Tok Wang Ling, Chee Yong Chan: Prefix Path Streaming: A New Clustering Method for Optimal Holistic XML Twig Pattern Matching. DEXA 2004: 801-810
37		Ting Chen, Dimitris N. Metaxas, Leon Axel: 3D Cardiac Anatomy Reconstruction Using High Resolution CT Data. MICCAI (1) 2004: 411-418
36		Tushar Manglik, Alexandru Cernicanu, Vinay S. Pai, Daniel Kim, Ting Chen, Pradnya Dugal, Bharathi Batchu, Leon Axel: Gabor Filter-Based Automated Strain Computation from Tagged MR Images. MICCAI (2) 2004: 1064-1065
35		Yao-Ting Huang, Kui Zhang, Ting Chen, Kun-Mao Chao: Approximation Algorithms for the Selection of Robust Tag SNPs. WABI 2004: 278-289
34		Yuan Fa, Ya Bing Chen, Tok Wang Ling, Ting Chen: Materialized View Maintenance for XML Documents. WISE 2004: 365-371
33		Minghua Deng, Zhidong Tu, Fengzhu Sun, Ting Chen: Mapping gene ontology to proteins based on protein-protein interaction data. Bioinformatics 20(6): 895-902 (2004)
32		Minghua Deng, Ting Chen, Fengzhu Sun: An Integrated Probabilistic Model for Functional Prediction of Proteins. Journal of Computational Biology 11(2/3): 463-475 (2004)
	2003
31		Bingwen Lu, Ting Chen: A suffix tree approach to the interpretation of tandem mass spectra: applications to peptides of non-specific digestion and post-translational modifications. ECCB 2003: 113-121
30		Ting Chen, Dimitris N. Metaxas: Gibbs Prior Models, Marching Cubes, and Deformable Models: A Hybrid Framework for 3D Medical Image Segmentation. MICCAI (2) 2003: 703-710
29		Minghua Deng, Fengzhu Sun, Ting Chen: Assessment of the reliability of protein-protein interactions and protein function prediction. Pacific Symposium on Biocomputing 2003: 140-151
28		Kui Zhang, Fengzhu Sun, Michael S. Waterman, Ting Chen: Dynamic programming algorithms for haplotype block partitioning: applications to human chromosome 21 haplotype data. RECOMB 2003: 332-340
27		Minghua Deng, Ting Chen, Fengzhu Sun: An integrated probabilistic model for functional prediction of proteins. RECOMB 2003: 95-103
26		Yong He, Ting Chen: A New Approximation Algorithm for Sorting of Signed Permutations. J. Comput. Sci. Technol. 18(1): 125-130 (2003)
25		Bingwen Lu, Ting Chen: A Suboptimal Algorithm for De Novo Peptide Sequencing via Tandem Mass Spectrometry. Journal of Computational Biology 10(1): 1-12 (2003)
24		Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun: Prediction of Protein Function Using Protein-Protein Interaction Data. Journal of Computational Biology 10(6): 947-960 (2003)
	2002
23		Minghua Deng, Kui Zhang, Shipra Mehta, Ting Chen, Fengzhu Sun: Prediction of Protein Function Using Protein-Protein Interaction Data. CSB 2002: 197-206
22		Kui Zhang, Ting Chen, Michael S. Waterman, Zhaohui S. Qin, Jun S. Liu, Fengzhu Sun: Dynamic Programming Algorithms for Haplotype Block Partitioning and Tag SNP Selection Using Haplotype Data or Genotype Data. Computational Methods for SNPs and Haplotype Inference 2002: 96-112
21		Ting Chen, Dimitris N. Metaxas: Integration of Gibbs Prior Models and Deformable Models for 3D Medical Image Segmentation. ICPR (1) 2002: 719-722
20		Minghua Deng, Shipra Mehta, Fengzhu Sun, Ting Chen: Inferring domain-domain interactions from protein-protein interactions. RECOMB 2002: 117-126
19		Ting Chen, Q. H. Wu, Reza Rahmani-Torkaman, Jim Hughes: A pseudo top-hat mathematical morphological approach to edge detection in dark regions. Pattern Recognition 35(1): 199-210 (2002)
	2001
18		Celina Imielinska, Dimitris N. Metaxas, Jayaram K. Udupa, Yinpeng Jin, Ting Chen: Hybrid Segmentation of Anatomical Data. MICCAI 2001: 1048-1057
17		Abbas El Gamal, Ting Chen: A Graduate Level Course on Image Sensors and Digital Cameras. MSE 2001: 102-
16		Ting Chen: Gene-finding via tandem mass spectrometry. RECOMB 2001: 87-94
15		Ting Chen, Jacob D. Jaffe, George M. Church: Algorithms for identifying protein cross-links via tandem mass spectrometry. RECOMB 2001: 95-102
14		Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church: A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry CoRR cs.CE/0101016: (2001)
13		Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church: A Dynamic Programming Approach to De Novo Peptide Sequencing via Tandem Mass Spectrometry. Journal of Computational Biology 8(3): 325-337 (2001)
12		Ting Chen, Jacob D. Jaffe, George M. Church: Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry. Journal of Computational Biology 8(6): 571-583 (2001)
11		Ting Chen, Vladimir Filkov, Steven Skiena: Identifying gene regulatory networks from experimental data. Parallel Computing 27(1-2): 141-162 (2001)
	2000
10		Ting Chen, Dimitris N. Metaxas: Image Segmentation Based on the Integration of Markov Random Fields and Deformable Models. MICCAI 2000: 256-265
9		Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M. Church: A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry. SODA 2000: 389-398
8		Ting Chen, Steven Skiena: A case study in genome-level fragment assembly. Bioinformatics 16(6): 494-500 (2000)
	1999
7		Ting Chen, Ming-Yang Kao: On the Informational Asymmetry between Upper and Lower Bounds for Ultrametric Evolutionary Trees. ESA 1999: 248-256
6		Ethan L. Miller, Dan Shen, Junli Liu, Charles K. Nicholas, Ting Chen: Techniques for Gigabyte-Scale N-gram Based Information Retrieval on Personal Computers. PDPTA 1999: 1410-1416
5		Ting Chen, Hongyu L. He, George M. Church: Modeling Gene Expression with Differential Equations. Pacific Symposium on Biocomputing 1999: 29-40
4		Ting Chen, Vladimir Filkov, Steven Skiena: Identifying gene regulatory networks from experimental data. RECOMB 1999: 94-103
	1997
3		Ting Chen, Steven Skiena: Trie-Based Data Structures for Sequence Assembly. CPM 1997: 206-223
	1996
2		Ting Chen, Steven Skiena: Sorting with Fixed-length Reversals. Discrete Applied Mathematics 71(1-3): 269-295 (1996)
	1994
1		Ting Chen: Artificial Neural Networks for Motion Analysis. ICTAI 1994: 175-180

Coauthor Index

1	Michelle N. Arbeitman	[61]
2	Leon Axel	[36] [37] [53] [62] [67] [69] [71] [72] [75] [76] [77] [78] [79]
3	James Babb	[75]
4	Akanksha Baid	[66] [73] [82] [86]
5	Bharathi Batchu	[36]
6	Alexandru Cernicanu	[36]
7	Xiaoyong Chai	[73] [82] [86]
8	Biman Chakraborty	[60]
9	Chee Yong Chan (Chee-Yong Chan)	[38] [48]
10	Kun-Mao Chao	[35] [42] [45] [50]
11	Xia Chen	[80]
12	Ya Bing Chen	[34]
13	Yangho Chen	[83]
14	Fei Chen	[73] [82] [86]
15	Eric Chu	[66] [73] [82] [86]
16	Sohae Chung	[67] [69] [72]
17	George M. Church	[5] [9] [12] [13] [14] [15]
18	Pedro DeRose	[73] [82] [86]
19	Minghua Deng	[20] [23] [24] [27] [29] [32] [33] [59]
20	AnHai Doan	[66] [73] [74] [82] [86]
21	Pradnya Dugal	[36]
22	Debojyoti Dutta	[55] [56] [57] [65]
23	Yuan Fa	[34]
24	Vladimir Filkov	[4] [11]
25	Abbas El Gamal (Abbas A. El Gamal)	[17]
26	Byron J. Gao	[73] [82] [86]
27	Chaitanya Gokhale	[73] [82] [86]
28	Rajarshi Guha	[55] [56] [57]
29	Ping Guo	[54]
30	Hongyu L. He	[5]
31	Yong He	[26]
32	Jiansheng Huang	[73] [74] [82] [86]
33	Rui Huang	[62]
34	Xiaolei Huang	[40] [62]
35	Yao-Ting Huang	[35] [42] [45] [50]
36	Yuanqiang Huang	[87]
37	Jim Hughes	[19]
38	Suejung B. Huh	[71]
39	Frank K. Hwang (Frank Kwang-Ming Hwang)	[64]
40	Celina Imielinska	[18]
41	Jacob D. Jaffe	[12] [15]
42	Rui Jiang	[58]
43	Yinpeng Jin	[18]
44	Peter C. Jurs	[55] [56] [57]
45	Yan-Rong Kang	[54]
46	Ming-Yang Kao	[7] [9] [13] [14]
47	Peter Kellman	[75]
48	Daniel Kim	[36] [75]
49	Sung N. Kim	[84]
50	C. C. Jay Kuo (C.-C. Jay Kuo)	[43]
51	Hyunju Lee	[59]
52	Feng Li	[70]
53	Hua Li	[85] [88]
54	Liqing Li	[80]
55	Ben Liblit	[68]
56	Tok Wang Ling	[34] [38] [39] [41] [46] [48] [49]
57	Fei Liu	[85]
58	Jun S. Liu	[22] [44]
59	Junli Liu	[6]
60	Bingwen Lu	[25] [31]
61	Jiaheng Lu	[41] [46] [48] [49]
62	Zhongzhi Luan	[87]
63	Daofeng Luo	[39]
64	Tushar Manglik	[36] [53]
65	Shipra Mehta	[20] [23] [24]
66	Xiaofeng Meng	[39]
67	Dimitris N. Metaxas	[10] [18] [21] [30] [37] [40] [62] [71] [76] [77] [78] [79] [84]
68	Ethan L. Miller	[6]
69	Tulika Mitra	[47] [51] [60] [63]
70	Piramanayagam Arumuga Nainar	[68]
71	Jeffrey F. Naughton	[66] [73] [74] [82] [86]
72	Charles K. Nicholas	[6]
73	Vinay S. Pai	[36]
74	Depei Qian	[87]
75	Zhen Qian	[62] [71]
76	Zhaohui S. Qin	[22] [44]
77	Reza Rahmani-Torkaman	[19]
78	Gunaretnam Rajagopal	[84]
79	Raghu Ramakrishnan	[73]
80	Yinan Ren	[87]
81	Jake Rosin	[68]
82	Abhik Roychoudhury	[47] [51] [60] [63]
83	John Rush	[9] [13] [14]
84	Joël Schaerer	[71]
85	Dan Shen	[6]
86	Warren Shen	[73] [82] [86]
87	Steven Skiena	[2] [3] [4] [8] [11]
88	Tade Souaiaia	[83]
89	Shih-Chieh Su	[43]
90	Vivy Suhendra	[47] [51] [63]
91	Fengzhu Sun	[20] [22] [23] [24] [27] [28] [29] [32] [33] [44] [58] [59] [61]
92	Lingli Sun	[81]
93	Matthew Tepel	[9] [13] [14]
94	Zhidong Tu	[33] [61]
95	Jayaram K. Udupa	[18]
96	Ba-Quy Vuong	[73] [82] [86]
97	Yunhu Wan	[52]
98	Li Wang	[61]
99	Xiaoxu Wang	[71] [76] [77] [78] [79]
100	Yongjian Wang	[87]
101	Michael S. Waterman	[22] [28] [44]
102	Q. H. Wu	[19]
103	Zhongxin Wu	[87]
104	Hua Yang	[58]
105	Ning j. Yue	[84]
106	Chong Zhang	[80]
107	Kui Zhang	[22] [23] [24] [28] [35] [44] [45]
108	Shaoting Zhang	[77]
109	Xiaosong Zhang	[85] [88]
110	Jiong Zheng	[88]
111	Jinghao Zhou	[84]
112	Yang Zhou	[54]
113	Jun Zhuang	[54]

Colors in the list of coauthors