 | 2009 |
|---|
| 78 |       | Michael Beckstette,
Robert Homann,
Robert Giegerich,
Stefan Kurtz:
Significant speedup of database searches with HMMs by search space reduction with PSSM family models.
Bioinformatics 25(24): 3251-3258 (2009) |
| 77 | | Robert Homann,
David Fleer,
Robert Giegerich,
Marc Rehmsmeier:
mkESA: enhanced suffix array construction tool.
Bioinformatics 25(8): 1084-1085 (2009) |
| 76 | | Mohamed Ibrahim Abouelhoda,
Robert Giegerich,
Behshad Behzadi,
Jean-Marc Steyaert:
Alignment of Minisatellite Maps Based on Run-Length Encoding Scheme.
J. Bioinformatics and Computational Biology 7(2): 287-308 (2009) |
| 2008 |
|---|
| 75 | | Mohamed Ibrahim Abouelhoda,
Robert Giegerich,
Behshad Behzadi,
Jean-Marc Steyaert:
Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach.
APBC 2008: 261-272 |
| 74 | | Julia Herold,
Stefan Kurtz,
Robert Giegerich:
Efficient computation of absent words in genomic sequences.
BMC Bioinformatics 9: (2008) |
| 73 | | Anna-Lena Lamprecht,
Tiziana Margaria,
Bernhard Steffen,
Alexander Sczyrba,
Sven Hartmeier,
Robert Giegerich:
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI.
BMC Bioinformatics 9(S-4): (2008) |
| 72 | | Stefan Janssen,
Jens Reeder,
Robert Giegerich:
Shape based indexing for faster search of RNA family databases.
BMC Bioinformatics 9: (2008) |
| 71 | | Alexander Sczyrba,
Susanne Konermann,
Robert Giegerich:
Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server.
Briefings in Bioinformatics 9(3): 243-249 (2008) |
| 70 | | Robert Giegerich,
Alvis Brazma,
Inge Jonassen,
Esko Ukkonen,
Martin Vingron:
The BREW workshop series: a stimulating experience in PhD education.
Briefings in Bioinformatics 9(3): 250-253 (2008) |
| 2007 |
|---|
| 69 | | Claus Brabrand,
Robert Giegerich,
Anders Møller:
Analyzing Ambiguity of Context-Free Grammars.
CIAA 2007: 214-225 |
| 68 | | Janina Reeder,
Jens Reeder,
Robert Giegerich:
Locomotif: from graphical motif description to RNA motif search.
ISMB/ECCB (Supplement of Bioinformatics) 2007: 392-400 |
| 67 | | Jens Reeder,
Peter Steffen,
Robert Giegerich:
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.
Nucleic Acids Research 35(Web-Server-Issue): 320-324 (2007) |
| 2006 |
|---|
| 66 | | Janina Reeder,
Robert Giegerich:
A graphical programming system for molecular motif search.
GPCE 2006: 131-140 |
| 65 | | Robert Giegerich,
Peter Steffen:
Challenges in the compilation of a domain specific language for dynamic programming.
SAC 2006: 1603-1609 |
| 64 | | Peter Steffen,
Robert Giegerich:
Correction: versatile and declarative dynamic programming using pair algebras.
BMC Bioinformatics 7: 214 (2006) |
| 63 | | Michael Beckstette,
Robert Homann,
Robert Giegerich,
Stefan Kurtz:
Fast index based algorithms and software for matching position specific scoring matrices.
BMC Bioinformatics 7: 389 (2006) |
| 62 | | Philipp N. Seibel,
Jan Krüger,
Sven Hartmeier,
Knut Schwarzer,
Kai Löwenthal,
Henning Mersch,
Thomas Dandekar,
Robert Giegerich:
XML schemas for common bioinformatic data types and their application in workflow systems.
BMC Bioinformatics 7: 490 (2006) |
| 61 | | Peter Steffen,
Björn Voß,
Marc Rehmsmeier,
Jens Reeder,
Robert Giegerich:
RNAshapes: an integrated RNA analysis package based on abstract shapes.
Bioinformatics 22(4): 500-503 (2006) |
| 60 | | Wolfgang Gerlach,
Robert Giegerich:
GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing.
Bioinformatics 22(6): 762-764 (2006) |
| 59 | | Peter Steffen,
Robert Giegerich:
Table design in dynamic programming.
Inf. Comput. 204(9): 1325-1345 (2006) |
| 58 | | Ketil Malde,
Robert Giegerich:
Calculating PSSM probabilities with lazy dynamic programming.
J. Funct. Program. 16(1): 75-81 (2006) |
| 2005 |
|---|
| 57 | | Janina Reeder,
Peter Steffen,
Robert Giegerich:
Effective ambiguity checking in biosequence analysis.
BMC Bioinformatics 6: 153 (2005) |
| 56 | | Peter Steffen,
Robert Giegerich:
Versatile and declarative dynamic programming using pair algebras.
BMC Bioinformatics 6: 224 (2005) |
| 55 | | Jens Reeder,
Robert Giegerich:
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction.
Bioinformatics 21(17): 3516-3523 (2005) |
| 2004 |
|---|
| 54 |  | Robert Giegerich,
Jens Stoye:
Proceedings of the German Conference on Bioinformatics (GCB 2004), Bielefeld, Germany, October 4-6, 2004
GI 2004 |
| 53 | | Michael Beckstette,
Dirk Strothmann,
Robert Homann,
Robert Giegerich,
Stefan Kurtz:
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays.
German Conference on Bioinformatics 2004: 53-64 |
| 52 | | Jens Reeder,
Robert Giegerich:
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
BMC Bioinformatics 5: 104 (2004) |
| 51 | | Paul P. Gardner,
Robert Giegerich:
A comprehensive comparison of comparative RNA structure prediction approaches.
BMC Bioinformatics 5: 140 (2004) |
| 50 | | Björn Voss,
Carsten Meyer,
Robert Giegerich:
Evaluating the predictability of conformational switching in RNA.
Bioinformatics 20(10): 1573-1582 (2004) |
| 49 | | Jomuna V. Choudhuri,
Chris Schleiermacher,
Stefan Kurtz,
Robert Giegerich:
GenAlyzer: interactive visualization of sequence similarities between entire genomes.
Bioinformatics 20(12): 1964-1965 (2004) |
| 48 | | Matthias Höchsmann,
Björn Voss,
Robert Giegerich:
Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach.
IEEE/ACM Trans. Comput. Biology Bioinform. 1(1): 53-62 (2004) |
| 47 | | Michael Beckstette,
Jens T. Mailänder,
Richard J. Marhöfer,
Alexander Sczyrba,
Enno Ohlebusch,
Robert Giegerich,
Paul M. Selzer:
Genlight: Interactive high-throughput sequence analysis and comparative genomics.
J. Integrative Bioinformatics 1(1): (2004) |
| 46 | | Jan Krüger,
Alexander Sczyrba,
Stefan Kurtz,
Robert Giegerich:
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Nucleic Acids Research 32(Web-Server-Issue): 301-304 (2004) |
| 45 | | Robert Giegerich,
Carsten Meyer,
Peter Steffen:
A discipline of dynamic programming over sequence data.
Sci. Comput. Program. 51(3): 215-263 (2004) |
| 2003 |
|---|
| 44 | | Matthias Höchsmann,
Thomas Töller,
Robert Giegerich,
Stefan Kurtz:
Local Similarity in RNA Secondary Structures.
CSB 2003: 159-168 |
| 43 | | Björn Voß,
Robert Giegerich:
Prediction of conformational switching in RNA.
German Conference on Bioinformatics 2003: 173-178 |
| 42 | | Alexander Sczyrba,
Jan Krüger,
Henning Mersch,
Stefan Kurtz,
Robert Giegerich:
RNA-related tools on the Bielefeld Bioinformatics Server.
Nucleic Acids Research 31(13): 3767-3770 (2003) |
| 41 | | Robert Giegerich,
Stefan Kurtz,
Jens Stoye:
Efficient implementation of lazy suffix trees.
Softw., Pract. Exper. 33(11): 1035-1049 (2003) |
| 2002 |
|---|
| 40 | | Robert Giegerich,
Carsten Meyer:
Algebraic Dynamic Programming.
AMAST 2002: 349-364 |
| 39 | | Robert Giegerich:
Towards A Discipline of Dynamic Programming.
GI Jahrestagung 2002: 3-44 |
| 38 | | Robert Giegerich,
Peter Steffen:
Implementing Algebraic Dynamic Programming in the Functional and the Imperative Programming Paradigm.
MPC 2002: 1-20 |
| 37 | | Alexander Goesmann,
Martin Haubrock,
Folker Meyer,
Jörn Kalinowski,
Robert Giegerich:
PathFinder: reconstruction and dynamic visualization of metabolic pathways.
Bioinformatics 18(1): 124-129 (2002) |
| 2001 |
|---|
| 36 | | Dirk Evers,
Robert Giegerich:
Reducing the Conformation Space in RNA Structure Prediction.
German Conference on Bioinformatics 2001: 118-124 |
| 35 | | Georg Fuellen,
Johann-Wolfgang Wägele,
Robert Giegerich:
Minimum conflict: a divide-and-conquer approach to phylogeny estimation.
Bioinformatics 17(12): 1168-1178 (2001) |
| 2000 |
|---|
| 34 | | Robert Giegerich:
Explaining and Controlling Ambiguity in Dynamic Programming.
CPM 2000: 46-59 |
| 33 | | Stefan Kurtz,
Enno Ohlebusch,
Chris Schleiermacher,
Jens Stoye,
Robert Giegerich:
Computation and Visualization of Degenerate Repeats in Complete Genomes.
ISMB 2000: 228-238 |
| 32 | | Robert Giegerich:
A systematic approach to dynamic programming in bioinformatics.
Bioinformatics 16(8): 665-677 (2000) |
| 1999 |
|---|
| 31 | | Robert Giegerich,
Stefan Kurtz,
Jens Stoye:
Efficient Implementation of Lazy Suffix Trees.
Algorithm Engineering 1999: 30-42 |
| 30 | | Robert Giegerich,
Dirk Haase,
Marc Rehmsmeier:
Prediction and Visualization of Structural Switches in RNA.
Pacific Symposium on Biocomputing 1999: 126-137 |
| 29 | | Dirk Evers,
Robert Giegerich:
RNA movies: visualizing RNA secondary structure spaces.
Bioinformatics 15(1): 32-37 (1999) |
| 28 | | Bernd Bütow,
Robert Giegerich,
Enno Ohlebusch,
Stephan Thesing:
Semantic Matching for Left-Linear Convergent Rewrite Systems
Journal of Functional and Logic Programming 1999(11): (1999) |
| 1998 |
|---|
| 27 | | Robert Giegerich,
Dieter Lorenz:
ViSeL - An interactive course in DNA Sequencing.
Workshop Multimedia-Systeme, GI Jahrestagung 1998: 53-65 |
| 1997 |
|---|
| 26 | | Dirk Evers,
Robert Giegerich:
RNA Movies: Visualizing RNA secondary structure spaces.
German Conference on Bioinformatics 1997: 143 |
| 25 | | Henning Hermjakob,
Robert Giegerich,
Walter Arnold:
RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation.
ISMB 1997: 131-139 |
| 24 | | Robert Giegerich,
Stefan Kurtz:
From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction.
Algorithmica 19(3): 331-353 (1997) |
| 1996 |
|---|
| 23 | | Robert Giegerich,
Christian Büschking:
Sequence Analysis with Distributed Resources: A WWW-Based Course.
German Conference on Bioinformatics 1996: 208 |
| 22 | | Robert Giegerich,
Folker Meyer,
Chris Schleiermacher:
GeneFisher-Software Support for the Detection of Postulated Genes.
ISMB 1996: 68-77 |
| 1995 |
|---|
| 21 | | Bernd Bütow,
Robert Giegerich,
Enno Ohlebusch,
Stephan Thesing:
A New Strategy for Semantic Matching
PLILP 1995: 81-96 |
| 20 | | Robert Giegerich,
Stefan Kurtz:
A Comparison of Imperative and Purely Functional Suffix Tree Constructions.
Sci. Comput. Program. 25(2-3): 187-218 (1995) |
| 1994 |
|---|
| 19 | | Robert Giegerich,
Stefan Kurtz:
Suffix Trees in the Functional Programming Paradigm.
ESOP 1994: 225-240 |
| 1992 |
|---|
| 18 | | Robert Giegerich,
Susan L. Graham:
Code Generation - Concepts, Tools, Techniques, Workshop on Code Generation, Dagstuhl, Germany, 20-24 May 1991
Springer 1992 |
| 1991 |
|---|
| 17 | | Robert Giegerich:
Considerate Code Selection.
Code Generation 1991: 51-65 |
| 16 | | Robert Giegerich,
Willi Schepper:
Der Studiengang Naturwissenschaftliche Informatik an der Universität Bielefeld.
Physik und Informatik 1991: 180-184 |
| 15 | | Robert Giegerich,
Enno Ohlebusch:
An Implicit Representation of Infinite Sequences of Terms.
Bulletin of the EATCS 43: 174-182 (1991) |
| 1990 |
|---|
| 14 | | Robert Giegerich:
On the Structure of Verifiable Code Generator Specifications.
PLDI 1990: 1-8 |
| 13 | | Robert Giegerich:
Code Selection by Inversion of Order-Sorted Derivors.
Theor. Comput. Sci. 73(2): 177-211 (1990) |
| 1988 |
|---|
| 12 | | Robert Giegerich,
Karl Schmal:
Code Selection Techniques: Pattern Matching, Tree Parsing, and Inversion of Derivors.
ESOP 1988: 247-268 |
| 11 | | Robert Giegerich:
Composition and Evaluation of Attribute Coupled Grammars.
Acta Inf. 25(4): 355-423 (1988) |
| 1987 |
|---|
| 10 | | Harald Ganzinger,
Robert Giegerich:
A note on termination in combinatiosn of heterogeneous term rewriting systems.
Bulletin of the EATCS 31: 22-27 (1987) |
| 1985 |
|---|
| 9 | | Robert Giegerich:
Logic specification of code generation techniques.
Programs as Data Objects 1985: 96-111 |
| 1984 |
|---|
| 8 | | Harald Ganzinger,
Robert Giegerich:
Attribute coupled grammars.
SIGPLAN Symposium on Compiler Construction 1984: 157-170 |
| 1983 |
|---|
| 7 | | Robert Giegerich:
A Formal Framework for the Derivation of Machine-Specific Optimizers.
ACM Trans. Program. Lang. Syst. 5(3): 478-498 (1983) |
| 1982 |
|---|
| 6 | | Robert Giegerich:
A Formal Model of Instruction Set Semantics.
Fachtagung über Programmiersprachen 1982: 177-190 |
| 5 | | Robert Giegerich:
Automatic Generation of Machine Specific Code Optimizers.
POPL 1982: 75-81 |
| 4 | | Harald Ganzinger,
Robert Giegerich,
Ulrich Möncke,
Reinhard Wilhelm:
A Truly Generative Semantics-Directed Compiler Generator.
SIGPLAN Symposium on Compiler Construction 1982: 172-184 |
| 1981 |
|---|
| 3 | | Robert Giegerich,
Ulrich Möncke,
Reinhard Wilhelm:
Invariance of Approximate Semantics with Respect to Program Transformations.
GI Jahrestagung 1981: 1-10 |
| 1978 |
|---|
| 2 | | Robert Giegerich,
Reinhard Wilhelm:
Counter-One-Pass Features in One-Pass Compilation: A Formalization Using Attribute Grammars.
Inf. Process. Lett. 7(6): 279-284 (1978) |
| 1977 |
|---|
| 1 | | Robert Giegerich,
Reinhard Wilhelm:
Implementierbarkeit attributierter Grammatiken.
GI Jahrestagung 1977: 17-36 |
